agv_navigation_ws/fast_gicp/thirdparty/nvbio/nvBowtie/bowtie2/cuda/reduce.cu

/*
 * nvbio
 * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
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 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
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///
///\file reduce.cu
///

#include <nvBowtie/bowtie2/cuda/reduce.h>
#include <nvBowtie/bowtie2/cuda/reduce_impl.h>
#include <nvBowtie/bowtie2/cuda/params.h>
#include <nvBowtie/bowtie2/cuda/pipeline_states.h>

namespace nvbio {
namespace bowtie2 {
namespace cuda {

///
/// Reduce the scores associated to each read in the scoring queue to find the best 2 alignments.
///
void score_reduce(
    const ReduceBestApproxContext                                       context,
    const BestApproxScoringPipelineState<EditDistanceScoringScheme>&    pipeline,
    const ParamsPOD&                                                    params)
{
    score_reduce_t( context, pipeline, params );
}

///
/// Reduce the scores associated to each read in the scoring queue to find the best 2 alignments.
///
void score_reduce(
    const ReduceBestApproxContext                                           context,
    const BestApproxScoringPipelineState<SmithWatermanScoringScheme<> >&    pipeline,
    const ParamsPOD&                                                        params)
{
    score_reduce_t( context, pipeline, params );
}

///
/// Reduce the scores associated to each paired-end read in the scoring queue to find the best 2 alignments.
///
void score_reduce_paired(
    const ReduceBestApproxContext                                       context,
    const BestApproxScoringPipelineState<EditDistanceScoringScheme>&    pipeline,
    const ParamsPOD&                                                    params)
{
    score_reduce_paired_t( context, pipeline, params );
}

///
/// Reduce the scores associated to each paired-end read in the scoring queue to find the best 2 alignments.
///
void score_reduce_paired(
    const ReduceBestApproxContext                                           context,
    const BestApproxScoringPipelineState<SmithWatermanScoringScheme<> >&    pipeline,
    const ParamsPOD&                                                        params)
{
    score_reduce_paired_t( context, pipeline, params );
}

} // namespace cuda
} // namespace bowtie2
} // namespace nvbio