nvFM-server.dox 2.3 KB

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  1. /*
  2. * nvbio
  3. * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
  4. *
  5. * Redistribution and use in source and binary forms, with or without
  6. * modification, are permitted provided that the following conditions are met:
  7. * * Redistributions of source code must retain the above copyright
  8. * notice, this list of conditions and the following disclaimer.
  9. * * Redistributions in binary form must reproduce the above copyright
  10. * notice, this list of conditions and the following disclaimer in the
  11. * documentation and/or other materials provided with the distribution.
  12. * * Neither the name of the NVIDIA CORPORATION nor the
  13. * names of its contributors may be used to endorse or promote products
  14. * derived from this software without specific prior written permission.
  15. *
  16. * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
  17. * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  18. * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
  19. * DISCLAIMED. IN NO EVENT SHALL NVIDIA CORPORATION BE LIABLE FOR ANY
  20. * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
  21. * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  22. * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
  23. * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  24. * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  25. * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  26. */
  27. ///\page nvfm_server_page nvFM-server
  28. ///\htmlonly
  29. /// <img src="nvidia_cubes.png" style="position:relative; bottom:-10px; border:0px;"/>
  30. ///\endhtmlonly
  31. ///\par
  32. ///\n
  33. /// <b>nvFM-server</b> is an application built on top of \ref nvbio_page to load
  34. /// a reference index (created with \ref nvbwt_page and \ref nvssa_page) in <i>shared memory</i>
  35. /// so as to make it available to other processes.
  36. ///\par
  37. /// Given a BWT-based index <i>my-index.*</i>, the server can be launched with the following
  38. /// command-line:
  39. ///
  40. ///\verbatim
  41. /// ./nvFM-server my-index index &
  42. ///\endverbatim
  43. ///\par
  44. /// At this point the server will be accessible by other processes (such as \ref nvbowtie_page)
  45. /// as <i>index</i>.
  46. ///