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- nvbio_module("nvMicroAssembly")
- addsources(
- haplotype_caller.cu
- haplotype_caller.h
- assembly.h
- assembly_graph_inl.h
- assembly_graph.h
- kmers_inl.h
- kmers.h
- regions.h
- bam_io.h
- bam_io.cu
- )
- include_directories(${PROJECT_SOURCE_DIR}/contrib/htslib ${PROJECT_SOURCE_DIR}/contrib/zlib)
- cuda_add_executable(nvMicroAssembly ${nvMicroAssembly_srcs})
- target_link_libraries(nvMicroAssembly htslib nvbio zlibstatic lz4 crcstatic ${SYSTEM_LINK_LIBRARIES})
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