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- /*
- * nvbio
- * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * * Redistributions of source code must retain the above copyright
- * notice, this list of conditions and the following disclaimer.
- * * Redistributions in binary form must reproduce the above copyright
- * notice, this list of conditions and the following disclaimer in the
- * documentation and/or other materials provided with the distribution.
- * * Neither the name of the NVIDIA CORPORATION nor the
- * names of its contributors may be used to endorse or promote products
- * derived from this software without specific prior written permission.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
- * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- * DISCLAIMED. IN NO EVENT SHALL NVIDIA CORPORATION BE LIABLE FOR ANY
- * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
- * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- */
- #pragma once
- #include <nvbio/basic/types.h>
- namespace nvbio {
- namespace bowtie2 {
- namespace cuda {
- ///@addtogroup nvBowtie
- ///@{
- struct SimpleFunc
- {
- enum Type { LinearFunc = 0, LogFunc = 1, SqrtFunc = 2 };
- NVBIO_FORCEINLINE NVBIO_HOST_DEVICE
- SimpleFunc(const Type _type = LinearFunc, const float _k = 0.0f, const float _m = 1.0f) : type(_type), k(_k), m(_m) {}
- NVBIO_FORCEINLINE NVBIO_HOST_DEVICE
- int32 operator() (const int32 x) const
- {
- return int32( k + m * (type == LogFunc ? logf(float(x)) :
- type == SqrtFunc ? sqrtf(float(x)) :
- float(x)) );
- }
- const char* type_string() const
- {
- return type == LogFunc ? "log" :
- type == SqrtFunc ? "sqrt" :
- "linear";
- }
- const char* type_symbol() const
- {
- return type == LogFunc ? "G" :
- type == SqrtFunc ? "S" :
- "L";
- }
- Type type;
- float k;
- float m;
- };
- ///@} // group nvBowtie
- } // namespace cuda
- } // namespace bowtie2
- } // namespace nvbio
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