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- """Locally Optimal Block Preconditioned Conjugate Gradient methods.
- """
- # Author: Pearu Peterson
- # Created: February 2020
- from typing import Dict, Tuple, Optional
- import torch
- from torch import Tensor
- from . import _linalg_utils as _utils
- from .overrides import has_torch_function, handle_torch_function
- __all__ = ['lobpcg']
- def _symeig_backward_complete_eigenspace(D_grad, U_grad, A, D, U):
- # compute F, such that F_ij = (d_j - d_i)^{-1} for i != j, F_ii = 0
- F = D.unsqueeze(-2) - D.unsqueeze(-1)
- F.diagonal(dim1=-2, dim2=-1).fill_(float('inf'))
- F.pow_(-1)
- # A.grad = U (D.grad + (U^T U.grad * F)) U^T
- Ut = U.mT.contiguous()
- res = torch.matmul(
- U,
- torch.matmul(
- torch.diag_embed(D_grad) + torch.matmul(Ut, U_grad) * F,
- Ut
- )
- )
- return res
- def _polynomial_coefficients_given_roots(roots):
- """
- Given the `roots` of a polynomial, find the polynomial's coefficients.
- If roots = (r_1, ..., r_n), then the method returns
- coefficients (a_0, a_1, ..., a_n (== 1)) so that
- p(x) = (x - r_1) * ... * (x - r_n)
- = x^n + a_{n-1} * x^{n-1} + ... a_1 * x_1 + a_0
- Note: for better performance requires writing a low-level kernel
- """
- poly_order = roots.shape[-1]
- poly_coeffs_shape = list(roots.shape)
- # we assume p(x) = x^n + a_{n-1} * x^{n-1} + ... + a_1 * x + a_0,
- # so poly_coeffs = {a_0, ..., a_n, a_{n+1}(== 1)},
- # but we insert one extra coefficient to enable better vectorization below
- poly_coeffs_shape[-1] += 2
- poly_coeffs = roots.new_zeros(poly_coeffs_shape)
- poly_coeffs[..., 0] = 1
- poly_coeffs[..., -1] = 1
- # perform the Horner's rule
- for i in range(1, poly_order + 1):
- # note that it is computationally hard to compute backward for this method,
- # because then given the coefficients it would require finding the roots and/or
- # calculating the sensitivity based on the Vieta's theorem.
- # So the code below tries to circumvent the explicit root finding by series
- # of operations on memory copies imitating the Horner's method.
- # The memory copies are required to construct nodes in the computational graph
- # by exploting the explicit (not in-place, separate node for each step)
- # recursion of the Horner's method.
- # Needs more memory, O(... * k^2), but with only O(... * k^2) complexity.
- poly_coeffs_new = poly_coeffs.clone() if roots.requires_grad else poly_coeffs
- out = poly_coeffs_new.narrow(-1, poly_order - i, i + 1)
- out -= roots.narrow(-1, i - 1, 1) * poly_coeffs.narrow(-1, poly_order - i + 1, i + 1)
- poly_coeffs = poly_coeffs_new
- return poly_coeffs.narrow(-1, 1, poly_order + 1)
- def _polynomial_value(poly, x, zero_power, transition):
- """
- A generic method for computing poly(x) using the Horner's rule.
- Args:
- poly (Tensor): the (possibly batched) 1D Tensor representing
- polynomial coefficients such that
- poly[..., i] = (a_{i_0}, ..., a{i_n} (==1)), and
- poly(x) = poly[..., 0] * zero_power + ... + poly[..., n] * x^n
- x (Tensor): the value (possible batched) to evalate the polynomial `poly` at.
- zero_power (Tensor): the represenation of `x^0`. It is application-specific.
- transition (Callable): the function that accepts some intermediate result `int_val`,
- the `x` and a specific polynomial coefficient
- `poly[..., k]` for some iteration `k`.
- It basically performs one iteration of the Horner's rule
- defined as `x * int_val + poly[..., k] * zero_power`.
- Note that `zero_power` is not a parameter,
- because the step `+ poly[..., k] * zero_power` depends on `x`,
- whether it is a vector, a matrix, or something else, so this
- functionality is delegated to the user.
- """
- res = zero_power.clone()
- for k in range(poly.size(-1) - 2, -1, -1):
- res = transition(res, x, poly[..., k])
- return res
- def _matrix_polynomial_value(poly, x, zero_power=None):
- """
- Evaluates `poly(x)` for the (batched) matrix input `x`.
- Check out `_polynomial_value` function for more details.
- """
- # matrix-aware Horner's rule iteration
- def transition(curr_poly_val, x, poly_coeff):
- res = x.matmul(curr_poly_val)
- res.diagonal(dim1=-2, dim2=-1).add_(poly_coeff.unsqueeze(-1))
- return res
- if zero_power is None:
- zero_power = torch.eye(x.size(-1), x.size(-1), dtype=x.dtype, device=x.device) \
- .view(*([1] * len(list(x.shape[:-2]))), x.size(-1), x.size(-1))
- return _polynomial_value(poly, x, zero_power, transition)
- def _vector_polynomial_value(poly, x, zero_power=None):
- """
- Evaluates `poly(x)` for the (batched) vector input `x`.
- Check out `_polynomial_value` function for more details.
- """
- # vector-aware Horner's rule iteration
- def transition(curr_poly_val, x, poly_coeff):
- res = torch.addcmul(poly_coeff.unsqueeze(-1), x, curr_poly_val)
- return res
- if zero_power is None:
- zero_power = x.new_ones(1).expand(x.shape)
- return _polynomial_value(poly, x, zero_power, transition)
- def _symeig_backward_partial_eigenspace(D_grad, U_grad, A, D, U, largest):
- # compute a projection operator onto an orthogonal subspace spanned by the
- # columns of U defined as (I - UU^T)
- Ut = U.mT.contiguous()
- proj_U_ortho = -U.matmul(Ut)
- proj_U_ortho.diagonal(dim1=-2, dim2=-1).add_(1)
- # compute U_ortho, a basis for the orthogonal complement to the span(U),
- # by projecting a random [..., m, m - k] matrix onto the subspace spanned
- # by the columns of U.
- #
- # fix generator for determinism
- gen = torch.Generator(A.device)
- # orthogonal complement to the span(U)
- U_ortho = proj_U_ortho.matmul(
- torch.randn(
- (*A.shape[:-1], A.size(-1) - D.size(-1)),
- dtype=A.dtype,
- device=A.device,
- generator=gen
- )
- )
- U_ortho_t = U_ortho.mT.contiguous()
- # compute the coefficients of the characteristic polynomial of the tensor D.
- # Note that D is diagonal, so the diagonal elements are exactly the roots
- # of the characteristic polynomial.
- chr_poly_D = _polynomial_coefficients_given_roots(D)
- # the code belows finds the explicit solution to the Sylvester equation
- # U_ortho^T A U_ortho dX - dX D = -U_ortho^T A U
- # and incorporates it into the whole gradient stored in the `res` variable.
- #
- # Equivalent to the following naive implementation:
- # res = A.new_zeros(A.shape)
- # p_res = A.new_zeros(*A.shape[:-1], D.size(-1))
- # for k in range(1, chr_poly_D.size(-1)):
- # p_res.zero_()
- # for i in range(0, k):
- # p_res += (A.matrix_power(k - 1 - i) @ U_grad) * D.pow(i).unsqueeze(-2)
- # res -= chr_poly_D[k] * (U_ortho @ poly_D_at_A.inverse() @ U_ortho_t @ p_res @ U.t())
- #
- # Note that dX is a differential, so the gradient contribution comes from the backward sensitivity
- # Tr(f(U_grad, D_grad, A, U, D)^T dX) = Tr(g(U_grad, A, U, D)^T dA) for some functions f and g,
- # and we need to compute g(U_grad, A, U, D)
- #
- # The naive implementation is based on the paper
- # Hu, Qingxi, and Daizhan Cheng.
- # "The polynomial solution to the Sylvester matrix equation."
- # Applied mathematics letters 19.9 (2006): 859-864.
- #
- # We can modify the computation of `p_res` from above in a more efficient way
- # p_res = U_grad * (chr_poly_D[1] * D.pow(0) + ... + chr_poly_D[k] * D.pow(k)).unsqueeze(-2)
- # + A U_grad * (chr_poly_D[2] * D.pow(0) + ... + chr_poly_D[k] * D.pow(k - 1)).unsqueeze(-2)
- # + ...
- # + A.matrix_power(k - 1) U_grad * chr_poly_D[k]
- # Note that this saves us from redundant matrix products with A (elimination of matrix_power)
- U_grad_projected = U_grad
- series_acc = U_grad_projected.new_zeros(U_grad_projected.shape)
- for k in range(1, chr_poly_D.size(-1)):
- poly_D = _vector_polynomial_value(chr_poly_D[..., k:], D)
- series_acc += U_grad_projected * poly_D.unsqueeze(-2)
- U_grad_projected = A.matmul(U_grad_projected)
- # compute chr_poly_D(A) which essentially is:
- #
- # chr_poly_D_at_A = A.new_zeros(A.shape)
- # for k in range(chr_poly_D.size(-1)):
- # chr_poly_D_at_A += chr_poly_D[k] * A.matrix_power(k)
- #
- # Note, however, for better performance we use the Horner's rule
- chr_poly_D_at_A = _matrix_polynomial_value(chr_poly_D, A)
- # compute the action of `chr_poly_D_at_A` restricted to U_ortho_t
- chr_poly_D_at_A_to_U_ortho = torch.matmul(
- U_ortho_t,
- torch.matmul(
- chr_poly_D_at_A,
- U_ortho
- )
- )
- # we need to invert 'chr_poly_D_at_A_to_U_ortho`, for that we compute its
- # Cholesky decomposition and then use `torch.cholesky_solve` for better stability.
- # Cholesky decomposition requires the input to be positive-definite.
- # Note that `chr_poly_D_at_A_to_U_ortho` is positive-definite if
- # 1. `largest` == False, or
- # 2. `largest` == True and `k` is even
- # under the assumption that `A` has distinct eigenvalues.
- #
- # check if `chr_poly_D_at_A_to_U_ortho` is positive-definite or negative-definite
- chr_poly_D_at_A_to_U_ortho_sign = -1 if (largest and (k % 2 == 1)) else +1
- chr_poly_D_at_A_to_U_ortho_L = torch.linalg.cholesky(
- chr_poly_D_at_A_to_U_ortho_sign * chr_poly_D_at_A_to_U_ortho
- )
- # compute the gradient part in span(U)
- res = _symeig_backward_complete_eigenspace(
- D_grad, U_grad, A, D, U
- )
- # incorporate the Sylvester equation solution into the full gradient
- # it resides in span(U_ortho)
- res -= U_ortho.matmul(
- chr_poly_D_at_A_to_U_ortho_sign * torch.cholesky_solve(
- U_ortho_t.matmul(series_acc),
- chr_poly_D_at_A_to_U_ortho_L
- )
- ).matmul(Ut)
- return res
- def _symeig_backward(D_grad, U_grad, A, D, U, largest):
- # if `U` is square, then the columns of `U` is a complete eigenspace
- if U.size(-1) == U.size(-2):
- return _symeig_backward_complete_eigenspace(
- D_grad, U_grad, A, D, U
- )
- else:
- return _symeig_backward_partial_eigenspace(
- D_grad, U_grad, A, D, U, largest
- )
- class LOBPCGAutogradFunction(torch.autograd.Function):
- @staticmethod
- def forward(ctx, # type: ignore[override]
- A: Tensor,
- k: Optional[int] = None,
- B: Optional[Tensor] = None,
- X: Optional[Tensor] = None,
- n: Optional[int] = None,
- iK: Optional[Tensor] = None,
- niter: Optional[int] = None,
- tol: Optional[float] = None,
- largest: Optional[bool] = None,
- method: Optional[str] = None,
- tracker: None = None,
- ortho_iparams: Optional[Dict[str, int]] = None,
- ortho_fparams: Optional[Dict[str, float]] = None,
- ortho_bparams: Optional[Dict[str, bool]] = None
- ) -> Tuple[Tensor, Tensor]:
- # makes sure that input is contiguous for efficiency.
- # Note: autograd does not support dense gradients for sparse input yet.
- A = A.contiguous() if (not A.is_sparse) else A
- if B is not None:
- B = B.contiguous() if (not B.is_sparse) else B
- D, U = _lobpcg(
- A, k, B, X,
- n, iK, niter, tol, largest, method, tracker,
- ortho_iparams, ortho_fparams, ortho_bparams
- )
- ctx.save_for_backward(A, B, D, U)
- ctx.largest = largest
- return D, U
- @staticmethod
- def backward(ctx, D_grad, U_grad):
- A_grad = B_grad = None
- grads = [None] * 14
- A, B, D, U = ctx.saved_tensors
- largest = ctx.largest
- # lobpcg.backward has some limitations. Checks for unsupported input
- if A.is_sparse or (B is not None and B.is_sparse and ctx.needs_input_grad[2]):
- raise ValueError(
- 'lobpcg.backward does not support sparse input yet.'
- 'Note that lobpcg.forward does though.'
- )
- if A.dtype in (torch.complex64, torch.complex128) or \
- B is not None and B.dtype in (torch.complex64, torch.complex128):
- raise ValueError(
- 'lobpcg.backward does not support complex input yet.'
- 'Note that lobpcg.forward does though.'
- )
- if B is not None:
- raise ValueError(
- 'lobpcg.backward does not support backward with B != I yet.'
- )
- if largest is None:
- largest = True
- # symeig backward
- if B is None:
- A_grad = _symeig_backward(
- D_grad, U_grad, A, D, U, largest
- )
- # A has index 0
- grads[0] = A_grad
- # B has index 2
- grads[2] = B_grad
- return tuple(grads)
- def lobpcg(A: Tensor,
- k: Optional[int] = None,
- B: Optional[Tensor] = None,
- X: Optional[Tensor] = None,
- n: Optional[int] = None,
- iK: Optional[Tensor] = None,
- niter: Optional[int] = None,
- tol: Optional[float] = None,
- largest: Optional[bool] = None,
- method: Optional[str] = None,
- tracker: None = None,
- ortho_iparams: Optional[Dict[str, int]] = None,
- ortho_fparams: Optional[Dict[str, float]] = None,
- ortho_bparams: Optional[Dict[str, bool]] = None
- ) -> Tuple[Tensor, Tensor]:
- """Find the k largest (or smallest) eigenvalues and the corresponding
- eigenvectors of a symmetric positive definite generalized
- eigenvalue problem using matrix-free LOBPCG methods.
- This function is a front-end to the following LOBPCG algorithms
- selectable via `method` argument:
- `method="basic"` - the LOBPCG method introduced by Andrew
- Knyazev, see [Knyazev2001]. A less robust method, may fail when
- Cholesky is applied to singular input.
- `method="ortho"` - the LOBPCG method with orthogonal basis
- selection [StathopoulosEtal2002]. A robust method.
- Supported inputs are dense, sparse, and batches of dense matrices.
- .. note:: In general, the basic method spends least time per
- iteration. However, the robust methods converge much faster and
- are more stable. So, the usage of the basic method is generally
- not recommended but there exist cases where the usage of the
- basic method may be preferred.
- .. warning:: The backward method does not support sparse and complex inputs.
- It works only when `B` is not provided (i.e. `B == None`).
- We are actively working on extensions, and the details of
- the algorithms are going to be published promptly.
- .. warning:: While it is assumed that `A` is symmetric, `A.grad` is not.
- To make sure that `A.grad` is symmetric, so that `A - t * A.grad` is symmetric
- in first-order optimization routines, prior to running `lobpcg`
- we do the following symmetrization map: `A -> (A + A.t()) / 2`.
- The map is performed only when the `A` requires gradients.
- Args:
- A (Tensor): the input tensor of size :math:`(*, m, m)`
- B (Tensor, optional): the input tensor of size :math:`(*, m,
- m)`. When not specified, `B` is interpereted as
- identity matrix.
- X (tensor, optional): the input tensor of size :math:`(*, m, n)`
- where `k <= n <= m`. When specified, it is used as
- initial approximation of eigenvectors. X must be a
- dense tensor.
- iK (tensor, optional): the input tensor of size :math:`(*, m,
- m)`. When specified, it will be used as preconditioner.
- k (integer, optional): the number of requested
- eigenpairs. Default is the number of :math:`X`
- columns (when specified) or `1`.
- n (integer, optional): if :math:`X` is not specified then `n`
- specifies the size of the generated random
- approximation of eigenvectors. Default value for `n`
- is `k`. If :math:`X` is specified, the value of `n`
- (when specified) must be the number of :math:`X`
- columns.
- tol (float, optional): residual tolerance for stopping
- criterion. Default is `feps ** 0.5` where `feps` is
- smallest non-zero floating-point number of the given
- input tensor `A` data type.
- largest (bool, optional): when True, solve the eigenproblem for
- the largest eigenvalues. Otherwise, solve the
- eigenproblem for smallest eigenvalues. Default is
- `True`.
- method (str, optional): select LOBPCG method. See the
- description of the function above. Default is
- "ortho".
- niter (int, optional): maximum number of iterations. When
- reached, the iteration process is hard-stopped and
- the current approximation of eigenpairs is returned.
- For infinite iteration but until convergence criteria
- is met, use `-1`.
- tracker (callable, optional) : a function for tracing the
- iteration process. When specified, it is called at
- each iteration step with LOBPCG instance as an
- argument. The LOBPCG instance holds the full state of
- the iteration process in the following attributes:
- `iparams`, `fparams`, `bparams` - dictionaries of
- integer, float, and boolean valued input
- parameters, respectively
- `ivars`, `fvars`, `bvars`, `tvars` - dictionaries
- of integer, float, boolean, and Tensor valued
- iteration variables, respectively.
- `A`, `B`, `iK` - input Tensor arguments.
- `E`, `X`, `S`, `R` - iteration Tensor variables.
- For instance:
- `ivars["istep"]` - the current iteration step
- `X` - the current approximation of eigenvectors
- `E` - the current approximation of eigenvalues
- `R` - the current residual
- `ivars["converged_count"]` - the current number of converged eigenpairs
- `tvars["rerr"]` - the current state of convergence criteria
- Note that when `tracker` stores Tensor objects from
- the LOBPCG instance, it must make copies of these.
- If `tracker` sets `bvars["force_stop"] = True`, the
- iteration process will be hard-stopped.
- ortho_iparams, ortho_fparams, ortho_bparams (dict, optional):
- various parameters to LOBPCG algorithm when using
- `method="ortho"`.
- Returns:
- E (Tensor): tensor of eigenvalues of size :math:`(*, k)`
- X (Tensor): tensor of eigenvectors of size :math:`(*, m, k)`
- References:
- [Knyazev2001] Andrew V. Knyazev. (2001) Toward the Optimal
- Preconditioned Eigensolver: Locally Optimal Block Preconditioned
- Conjugate Gradient Method. SIAM J. Sci. Comput., 23(2),
- 517-541. (25 pages)
- https://epubs.siam.org/doi/abs/10.1137/S1064827500366124
- [StathopoulosEtal2002] Andreas Stathopoulos and Kesheng
- Wu. (2002) A Block Orthogonalization Procedure with Constant
- Synchronization Requirements. SIAM J. Sci. Comput., 23(6),
- 2165-2182. (18 pages)
- https://epubs.siam.org/doi/10.1137/S1064827500370883
- [DuerschEtal2018] Jed A. Duersch, Meiyue Shao, Chao Yang, Ming
- Gu. (2018) A Robust and Efficient Implementation of LOBPCG.
- SIAM J. Sci. Comput., 40(5), C655-C676. (22 pages)
- https://epubs.siam.org/doi/abs/10.1137/17M1129830
- """
- if not torch.jit.is_scripting():
- tensor_ops = (A, B, X, iK)
- if (not set(map(type, tensor_ops)).issubset((torch.Tensor, type(None))) and has_torch_function(tensor_ops)):
- return handle_torch_function(
- lobpcg, tensor_ops, A, k=k,
- B=B, X=X, n=n, iK=iK, niter=niter, tol=tol,
- largest=largest, method=method, tracker=tracker,
- ortho_iparams=ortho_iparams,
- ortho_fparams=ortho_fparams,
- ortho_bparams=ortho_bparams)
- if not torch._jit_internal.is_scripting():
- if A.requires_grad or (B is not None and B.requires_grad):
- # While it is expected that `A` is symmetric,
- # the `A_grad` might be not. Therefore we perform the trick below,
- # so that `A_grad` becomes symmetric.
- # The symmetrization is important for first-order optimization methods,
- # so that (A - alpha * A_grad) is still a symmetric matrix.
- # Same holds for `B`.
- A_sym = (A + A.mT) / 2
- B_sym = (B + B.mT) / 2 if (B is not None) else None
- return LOBPCGAutogradFunction.apply(
- A_sym, k, B_sym, X, n, iK, niter, tol, largest,
- method, tracker, ortho_iparams, ortho_fparams, ortho_bparams
- )
- else:
- if A.requires_grad or (B is not None and B.requires_grad):
- raise RuntimeError(
- 'Script and require grads is not supported atm.'
- 'If you just want to do the forward, use .detach()'
- 'on A and B before calling into lobpcg'
- )
- return _lobpcg(
- A, k, B, X,
- n, iK, niter, tol, largest, method, tracker,
- ortho_iparams, ortho_fparams, ortho_bparams
- )
- def _lobpcg(A: Tensor,
- k: Optional[int] = None,
- B: Optional[Tensor] = None,
- X: Optional[Tensor] = None,
- n: Optional[int] = None,
- iK: Optional[Tensor] = None,
- niter: Optional[int] = None,
- tol: Optional[float] = None,
- largest: Optional[bool] = None,
- method: Optional[str] = None,
- tracker: None = None,
- ortho_iparams: Optional[Dict[str, int]] = None,
- ortho_fparams: Optional[Dict[str, float]] = None,
- ortho_bparams: Optional[Dict[str, bool]] = None
- ) -> Tuple[Tensor, Tensor]:
- # A must be square:
- assert A.shape[-2] == A.shape[-1], A.shape
- if B is not None:
- # A and B must have the same shapes:
- assert A.shape == B.shape, (A.shape, B.shape)
- dtype = _utils.get_floating_dtype(A)
- device = A.device
- if tol is None:
- feps = {torch.float32: 1.2e-07,
- torch.float64: 2.23e-16}[dtype]
- tol = feps ** 0.5
- m = A.shape[-1]
- k = (1 if X is None else X.shape[-1]) if k is None else k
- n = (k if n is None else n) if X is None else X.shape[-1]
- if (m < 3 * n):
- raise ValueError(
- 'LPBPCG algorithm is not applicable when the number of A rows (={})'
- ' is smaller than 3 x the number of requested eigenpairs (={})'
- .format(m, n))
- method = 'ortho' if method is None else method
- iparams = {
- 'm': m,
- 'n': n,
- 'k': k,
- 'niter': 1000 if niter is None else niter,
- }
- fparams = {
- 'tol': tol,
- }
- bparams = {
- 'largest': True if largest is None else largest
- }
- if method == 'ortho':
- if ortho_iparams is not None:
- iparams.update(ortho_iparams)
- if ortho_fparams is not None:
- fparams.update(ortho_fparams)
- if ortho_bparams is not None:
- bparams.update(ortho_bparams)
- iparams['ortho_i_max'] = iparams.get('ortho_i_max', 3)
- iparams['ortho_j_max'] = iparams.get('ortho_j_max', 3)
- fparams['ortho_tol'] = fparams.get('ortho_tol', tol)
- fparams['ortho_tol_drop'] = fparams.get('ortho_tol_drop', tol)
- fparams['ortho_tol_replace'] = fparams.get('ortho_tol_replace', tol)
- bparams['ortho_use_drop'] = bparams.get('ortho_use_drop', False)
- if not torch.jit.is_scripting():
- LOBPCG.call_tracker = LOBPCG_call_tracker # type: ignore[assignment]
- if len(A.shape) > 2:
- N = int(torch.prod(torch.tensor(A.shape[:-2])))
- bA = A.reshape((N,) + A.shape[-2:])
- bB = B.reshape((N,) + A.shape[-2:]) if B is not None else None
- bX = X.reshape((N,) + X.shape[-2:]) if X is not None else None
- bE = torch.empty((N, k), dtype=dtype, device=device)
- bXret = torch.empty((N, m, k), dtype=dtype, device=device)
- for i in range(N):
- A_ = bA[i]
- B_ = bB[i] if bB is not None else None
- X_ = torch.randn((m, n), dtype=dtype, device=device) if bX is None else bX[i]
- assert len(X_.shape) == 2 and X_.shape == (m, n), (X_.shape, (m, n))
- iparams['batch_index'] = i
- worker = LOBPCG(A_, B_, X_, iK, iparams, fparams, bparams, method, tracker)
- worker.run()
- bE[i] = worker.E[:k]
- bXret[i] = worker.X[:, :k]
- if not torch.jit.is_scripting():
- LOBPCG.call_tracker = LOBPCG_call_tracker_orig # type: ignore[assignment]
- return bE.reshape(A.shape[:-2] + (k,)), bXret.reshape(A.shape[:-2] + (m, k))
- X = torch.randn((m, n), dtype=dtype, device=device) if X is None else X
- assert len(X.shape) == 2 and X.shape == (m, n), (X.shape, (m, n))
- worker = LOBPCG(A, B, X, iK, iparams, fparams, bparams, method, tracker)
- worker.run()
- if not torch.jit.is_scripting():
- LOBPCG.call_tracker = LOBPCG_call_tracker_orig # type: ignore[assignment]
- return worker.E[:k], worker.X[:, :k]
- class LOBPCG(object):
- """Worker class of LOBPCG methods.
- """
- def __init__(self,
- A: Optional[Tensor],
- B: Optional[Tensor],
- X: Tensor,
- iK: Optional[Tensor],
- iparams: Dict[str, int],
- fparams: Dict[str, float],
- bparams: Dict[str, bool],
- method: str,
- tracker: None
- ) -> None:
- # constant parameters
- self.A = A
- self.B = B
- self.iK = iK
- self.iparams = iparams
- self.fparams = fparams
- self.bparams = bparams
- self.method = method
- self.tracker = tracker
- m = iparams['m']
- n = iparams['n']
- # variable parameters
- self.X = X
- self.E = torch.zeros((n, ), dtype=X.dtype, device=X.device)
- self.R = torch.zeros((m, n), dtype=X.dtype, device=X.device)
- self.S = torch.zeros((m, 3 * n), dtype=X.dtype, device=X.device)
- self.tvars: Dict[str, Tensor] = {}
- self.ivars: Dict[str, int] = {'istep': 0}
- self.fvars: Dict[str, float] = {'_': 0.0}
- self.bvars: Dict[str, bool] = {'_': False}
- def __str__(self):
- lines = ['LOPBCG:']
- lines += [' iparams={}'.format(self.iparams)]
- lines += [' fparams={}'.format(self.fparams)]
- lines += [' bparams={}'.format(self.bparams)]
- lines += [' ivars={}'.format(self.ivars)]
- lines += [' fvars={}'.format(self.fvars)]
- lines += [' bvars={}'.format(self.bvars)]
- lines += [' tvars={}'.format(self.tvars)]
- lines += [' A={}'.format(self.A)]
- lines += [' B={}'.format(self.B)]
- lines += [' iK={}'.format(self.iK)]
- lines += [' X={}'.format(self.X)]
- lines += [' E={}'.format(self.E)]
- r = ''
- for line in lines:
- r += line + '\n'
- return r
- def update(self):
- """Set and update iteration variables.
- """
- if self.ivars['istep'] == 0:
- X_norm = float(torch.norm(self.X))
- iX_norm = X_norm ** -1
- A_norm = float(torch.norm(_utils.matmul(self.A, self.X))) * iX_norm
- B_norm = float(torch.norm(_utils.matmul(self.B, self.X))) * iX_norm
- self.fvars['X_norm'] = X_norm
- self.fvars['A_norm'] = A_norm
- self.fvars['B_norm'] = B_norm
- self.ivars['iterations_left'] = self.iparams['niter']
- self.ivars['converged_count'] = 0
- self.ivars['converged_end'] = 0
- if self.method == 'ortho':
- self._update_ortho()
- else:
- self._update_basic()
- self.ivars['iterations_left'] = self.ivars['iterations_left'] - 1
- self.ivars['istep'] = self.ivars['istep'] + 1
- def update_residual(self):
- """Update residual R from A, B, X, E.
- """
- mm = _utils.matmul
- self.R = mm(self.A, self.X) - mm(self.B, self.X) * self.E
- def update_converged_count(self):
- """Determine the number of converged eigenpairs using backward stable
- convergence criterion, see discussion in Sec 4.3 of [DuerschEtal2018].
- Users may redefine this method for custom convergence criteria.
- """
- # (...) -> int
- prev_count = self.ivars['converged_count']
- tol = self.fparams['tol']
- A_norm = self.fvars['A_norm']
- B_norm = self.fvars['B_norm']
- E, X, R = self.E, self.X, self.R
- rerr = torch.norm(R, 2, (0, )) * (torch.norm(X, 2, (0, )) * (A_norm + E[:X.shape[-1]] * B_norm)) ** -1
- converged = rerr < tol
- count = 0
- for b in converged:
- if not b:
- # ignore convergence of following pairs to ensure
- # strict ordering of eigenpairs
- break
- count += 1
- assert count >= prev_count, 'the number of converged eigenpairs ' \
- '(was {}, got {}) cannot decrease'.format(prev_count, count)
- self.ivars['converged_count'] = count
- self.tvars['rerr'] = rerr
- return count
- def stop_iteration(self):
- """Return True to stop iterations.
- Note that tracker (if defined) can force-stop iterations by
- setting ``worker.bvars['force_stop'] = True``.
- """
- return (self.bvars.get('force_stop', False)
- or self.ivars['iterations_left'] == 0
- or self.ivars['converged_count'] >= self.iparams['k'])
- def run(self):
- """Run LOBPCG iterations.
- Use this method as a template for implementing LOBPCG
- iteration scheme with custom tracker that is compatible with
- TorchScript.
- """
- self.update()
- if not torch.jit.is_scripting() and self.tracker is not None:
- self.call_tracker()
- while not self.stop_iteration():
- self.update()
- if not torch.jit.is_scripting() and self.tracker is not None:
- self.call_tracker()
- @torch.jit.unused
- def call_tracker(self):
- """Interface for tracking iteration process in Python mode.
- Tracking the iteration process is disabled in TorchScript
- mode. In fact, one should specify tracker=None when JIT
- compiling functions using lobpcg.
- """
- # do nothing when in TorchScript mode
- pass
- # Internal methods
- def _update_basic(self):
- """
- Update or initialize iteration variables when `method == "basic"`.
- """
- mm = torch.matmul
- ns = self.ivars['converged_end']
- nc = self.ivars['converged_count']
- n = self.iparams['n']
- largest = self.bparams['largest']
- if self.ivars['istep'] == 0:
- Ri = self._get_rayleigh_ritz_transform(self.X)
- M = _utils.qform(_utils.qform(self.A, self.X), Ri)
- E, Z = _utils.symeig(M, largest)
- self.X[:] = mm(self.X, mm(Ri, Z))
- self.E[:] = E
- np = 0
- self.update_residual()
- nc = self.update_converged_count()
- self.S[..., :n] = self.X
- W = _utils.matmul(self.iK, self.R)
- self.ivars['converged_end'] = ns = n + np + W.shape[-1]
- self.S[:, n + np:ns] = W
- else:
- S_ = self.S[:, nc:ns]
- Ri = self._get_rayleigh_ritz_transform(S_)
- M = _utils.qform(_utils.qform(self.A, S_), Ri)
- E_, Z = _utils.symeig(M, largest)
- self.X[:, nc:] = mm(S_, mm(Ri, Z[:, :n - nc]))
- self.E[nc:] = E_[:n - nc]
- P = mm(S_, mm(Ri, Z[:, n:2 * n - nc]))
- np = P.shape[-1]
- self.update_residual()
- nc = self.update_converged_count()
- self.S[..., :n] = self.X
- self.S[:, n:n + np] = P
- W = _utils.matmul(self.iK, self.R[:, nc:])
- self.ivars['converged_end'] = ns = n + np + W.shape[-1]
- self.S[:, n + np:ns] = W
- def _update_ortho(self):
- """
- Update or initialize iteration variables when `method == "ortho"`.
- """
- mm = torch.matmul
- ns = self.ivars['converged_end']
- nc = self.ivars['converged_count']
- n = self.iparams['n']
- largest = self.bparams['largest']
- if self.ivars['istep'] == 0:
- Ri = self._get_rayleigh_ritz_transform(self.X)
- M = _utils.qform(_utils.qform(self.A, self.X), Ri)
- E, Z = _utils.symeig(M, largest)
- self.X = mm(self.X, mm(Ri, Z))
- self.update_residual()
- np = 0
- nc = self.update_converged_count()
- self.S[:, :n] = self.X
- W = self._get_ortho(self.R, self.X)
- ns = self.ivars['converged_end'] = n + np + W.shape[-1]
- self.S[:, n + np:ns] = W
- else:
- S_ = self.S[:, nc:ns]
- # Rayleigh-Ritz procedure
- E_, Z = _utils.symeig(_utils.qform(self.A, S_), largest)
- # Update E, X, P
- self.X[:, nc:] = mm(S_, Z[:, :n - nc])
- self.E[nc:] = E_[:n - nc]
- P = mm(S_, mm(Z[:, n - nc:], _utils.basis(_utils.transpose(Z[:n - nc, n - nc:]))))
- np = P.shape[-1]
- # check convergence
- self.update_residual()
- nc = self.update_converged_count()
- # update S
- self.S[:, :n] = self.X
- self.S[:, n:n + np] = P
- W = self._get_ortho(self.R[:, nc:], self.S[:, :n + np])
- ns = self.ivars['converged_end'] = n + np + W.shape[-1]
- self.S[:, n + np:ns] = W
- def _get_rayleigh_ritz_transform(self, S):
- """Return a transformation matrix that is used in Rayleigh-Ritz
- procedure for reducing a general eigenvalue problem :math:`(S^TAS)
- C = (S^TBS) C E` to a standard eigenvalue problem :math: `(Ri^T
- S^TAS Ri) Z = Z E` where `C = Ri Z`.
- .. note:: In the original Rayleight-Ritz procedure in
- [DuerschEtal2018], the problem is formulated as follows::
- SAS = S^T A S
- SBS = S^T B S
- D = (<diagonal matrix of SBS>) ** -1/2
- R^T R = Cholesky(D SBS D)
- Ri = D R^-1
- solve symeig problem Ri^T SAS Ri Z = Theta Z
- C = Ri Z
- To reduce the number of matrix products (denoted by empty
- space between matrices), here we introduce element-wise
- products (denoted by symbol `*`) so that the Rayleight-Ritz
- procedure becomes::
- SAS = S^T A S
- SBS = S^T B S
- d = (<diagonal of SBS>) ** -1/2 # this is 1-d column vector
- dd = d d^T # this is 2-d matrix
- R^T R = Cholesky(dd * SBS)
- Ri = R^-1 * d # broadcasting
- solve symeig problem Ri^T SAS Ri Z = Theta Z
- C = Ri Z
- where `dd` is 2-d matrix that replaces matrix products `D M
- D` with one element-wise product `M * dd`; and `d` replaces
- matrix product `D M` with element-wise product `M *
- d`. Also, creating the diagonal matrix `D` is avoided.
- Args:
- S (Tensor): the matrix basis for the search subspace, size is
- :math:`(m, n)`.
- Returns:
- Ri (tensor): upper-triangular transformation matrix of size
- :math:`(n, n)`.
- """
- B = self.B
- mm = torch.matmul
- SBS = _utils.qform(B, S)
- d_row = SBS.diagonal(0, -2, -1) ** -0.5
- d_col = d_row.reshape(d_row.shape[0], 1)
- # TODO use torch.linalg.cholesky_solve once it is implemented
- R = torch.linalg.cholesky((SBS * d_row) * d_col, upper=True)
- return torch.linalg.solve_triangular(R, d_row.diag_embed(), upper=True, left=False)
- def _get_svqb(self,
- U: Tensor, # Tensor
- drop: bool, # bool
- tau: float # float
- ) -> Tensor:
- """Return B-orthonormal U.
- .. note:: When `drop` is `False` then `svqb` is based on the
- Algorithm 4 from [DuerschPhD2015] that is a slight
- modification of the corresponding algorithm
- introduced in [StathopolousWu2002].
- Args:
- U (Tensor) : initial approximation, size is (m, n)
- drop (bool) : when True, drop columns that
- contribution to the `span([U])` is small.
- tau (float) : positive tolerance
- Returns:
- U (Tensor) : B-orthonormal columns (:math:`U^T B U = I`), size
- is (m, n1), where `n1 = n` if `drop` is `False,
- otherwise `n1 <= n`.
- """
- if torch.numel(U) == 0:
- return U
- UBU = _utils.qform(self.B, U)
- d = UBU.diagonal(0, -2, -1)
- # Detect and drop exact zero columns from U. While the test
- # `abs(d) == 0` is unlikely to be True for random data, it is
- # possible to construct input data to lobpcg where it will be
- # True leading to a failure (notice the `d ** -0.5` operation
- # in the original algorithm). To prevent the failure, we drop
- # the exact zero columns here and then continue with the
- # original algorithm below.
- nz = torch.where(abs(d) != 0.0)
- assert len(nz) == 1, nz
- if len(nz[0]) < len(d):
- U = U[:, nz[0]]
- if torch.numel(U) == 0:
- return U
- UBU = _utils.qform(self.B, U)
- d = UBU.diagonal(0, -2, -1)
- nz = torch.where(abs(d) != 0.0)
- assert len(nz[0]) == len(d)
- # The original algorithm 4 from [DuerschPhD2015].
- d_col = (d ** -0.5).reshape(d.shape[0], 1)
- DUBUD = (UBU * d_col) * _utils.transpose(d_col)
- E, Z = _utils.symeig(DUBUD)
- t = tau * abs(E).max()
- if drop:
- keep = torch.where(E > t)
- assert len(keep) == 1, keep
- E = E[keep[0]]
- Z = Z[:, keep[0]]
- d_col = d_col[keep[0]]
- else:
- E[(torch.where(E < t))[0]] = t
- return torch.matmul(U * _utils.transpose(d_col), Z * E ** -0.5)
- def _get_ortho(self, U, V):
- """Return B-orthonormal U with columns are B-orthogonal to V.
- .. note:: When `bparams["ortho_use_drop"] == False` then
- `_get_ortho` is based on the Algorithm 3 from
- [DuerschPhD2015] that is a slight modification of
- the corresponding algorithm introduced in
- [StathopolousWu2002]. Otherwise, the method
- implements Algorithm 6 from [DuerschPhD2015]
- .. note:: If all U columns are B-collinear to V then the
- returned tensor U will be empty.
- Args:
- U (Tensor) : initial approximation, size is (m, n)
- V (Tensor) : B-orthogonal external basis, size is (m, k)
- Returns:
- U (Tensor) : B-orthonormal columns (:math:`U^T B U = I`)
- such that :math:`V^T B U=0`, size is (m, n1),
- where `n1 = n` if `drop` is `False, otherwise
- `n1 <= n`.
- """
- mm = torch.matmul
- mm_B = _utils.matmul
- m = self.iparams['m']
- tau_ortho = self.fparams['ortho_tol']
- tau_drop = self.fparams['ortho_tol_drop']
- tau_replace = self.fparams['ortho_tol_replace']
- i_max = self.iparams['ortho_i_max']
- j_max = self.iparams['ortho_j_max']
- # when use_drop==True, enable dropping U columns that have
- # small contribution to the `span([U, V])`.
- use_drop = self.bparams['ortho_use_drop']
- # clean up variables from the previous call
- for vkey in list(self.fvars.keys()):
- if vkey.startswith('ortho_') and vkey.endswith('_rerr'):
- self.fvars.pop(vkey)
- self.ivars.pop('ortho_i', 0)
- self.ivars.pop('ortho_j', 0)
- BV_norm = torch.norm(mm_B(self.B, V))
- BU = mm_B(self.B, U)
- VBU = mm(_utils.transpose(V), BU)
- i = j = 0
- stats = ''
- for i in range(i_max):
- U = U - mm(V, VBU)
- drop = False
- tau_svqb = tau_drop
- for j in range(j_max):
- if use_drop:
- U = self._get_svqb(U, drop, tau_svqb)
- drop = True
- tau_svqb = tau_replace
- else:
- U = self._get_svqb(U, False, tau_replace)
- if torch.numel(U) == 0:
- # all initial U columns are B-collinear to V
- self.ivars['ortho_i'] = i
- self.ivars['ortho_j'] = j
- return U
- BU = mm_B(self.B, U)
- UBU = mm(_utils.transpose(U), BU)
- U_norm = torch.norm(U)
- BU_norm = torch.norm(BU)
- R = UBU - torch.eye(UBU.shape[-1],
- device=UBU.device,
- dtype=UBU.dtype)
- R_norm = torch.norm(R)
- # https://github.com/pytorch/pytorch/issues/33810 workaround:
- rerr = float(R_norm) * float(BU_norm * U_norm) ** -1
- vkey = 'ortho_UBUmI_rerr[{}, {}]'.format(i, j)
- self.fvars[vkey] = rerr
- if rerr < tau_ortho:
- break
- VBU = mm(_utils.transpose(V), BU)
- VBU_norm = torch.norm(VBU)
- U_norm = torch.norm(U)
- rerr = float(VBU_norm) * float(BV_norm * U_norm) ** -1
- vkey = 'ortho_VBU_rerr[{}]'.format(i)
- self.fvars[vkey] = rerr
- if rerr < tau_ortho:
- break
- if m < U.shape[-1] + V.shape[-1]:
- # TorchScript needs the class var to be assigned to a local to
- # do optional type refinement
- B = self.B
- assert B is not None
- raise ValueError(
- 'Overdetermined shape of U:'
- ' #B-cols(={}) >= #U-cols(={}) + #V-cols(={}) must hold'
- .format(B.shape[-1], U.shape[-1], V.shape[-1]))
- self.ivars['ortho_i'] = i
- self.ivars['ortho_j'] = j
- return U
- # Calling tracker is separated from LOBPCG definitions because
- # TorchScript does not support user-defined callback arguments:
- LOBPCG_call_tracker_orig = LOBPCG.call_tracker
- def LOBPCG_call_tracker(self):
- self.tracker(self)
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